OneArray Studio Tutorials

Below are tutorials to guide you in your use of OneArray Studio:

The Quickstart Tutorials are designed to help you to quickly import and visualize your data in 20-30 minutes. We have also provided a small set of raw data to use for this purpose. These data files are three technical replicates of Sample A and Sample B from the Microarray Quality Control Consortium Project. To learn more about this dataset and the full study performed using Human OneArray, please download and read our MAQC Technote.

We also have a Comprehensive Tutorial developed by the software team that explores all the functions of Array Studio. This tutorial requires a larger timeframe and utilizes the entire MAQC dataset (Samples A, B, C, & D). Expect to set aside three or more hours to complete this tutorial.

A demo version of Array Studio can be downloaded here.

Quickstart Tutorials Function Description Est. Time Download Download sample data Right click on the file  and save to your computer to obtain the data used for the Quickstart Tutorials. 1 min zip Importing Getting your *.gpr data into OneArray Studio for analysis. 10 min pdf Filtering and Normalizing How to filter out background-level signals and normalize your filtered dataset. 10 min pdf Differential expression analysis How to perform ANOVA hypothesis testing to determine the fold changes in gene expression between two samples. 10 min pdf Clustering How to generate a Hierarchical clustering interactive diagram based on intensity data. 10 min pdf Chromosome Viewing How to view the changes in gene expression by position on the chromosome. 10 min pdf Pathway analysis How to perform Gene Ontology (GO)-based analysis to determine affected pathways in your experiment. 10 min TBA Comprehensive Tutorial Function Description Est. Time Download Learn Array Studio Functions An in-depth exploration of the functions and features of Array Studio using a 20-array MAQC dataset. 3+ hrs pdf